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Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
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Document Title
Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
Author
Yundaeng C, Nawae W, Naktang C, Shearman JR, Sonthirod C, Sangsrakru D, Yoocha T, Jomchai N, Sheedy JR, Mekiyanon S, Tuntaisong M, Pootakham W, Tangphatsornruang S
Name from Authors Collection
Scopus Author ID
56030033100
Scopus Author ID
36059124300
Affiliations
National Science & Technology Development Agency - Thailand
Type
Article; Data Paper
Source Title
DATA IN BRIEF
ISSN
2352-3409
Year
2020
Volume
33
Issue
6
Open Access
Green Published, gold
Publisher
ELSEVIER
DOI
10.1016/j.dib.2020.106470
Format
Abstract
Luffa acutangula and Luffa aegyptiaca are domesticated plants in the family Cucurbitaceae. They are mainly cultivated in the tropical and subtropical regions of Asia. The chloroplast genomes of many Cucurbitaceae species were sequenced to examine gene content and evolution. However, the chloroplast genome sequences of L. acutangula and L. aegyptiaca have not been reported. We report the first complete sequences of L. acutangula and L. aegyptiaca chloroplast genomes obtained from Pacific Biosciences sequencing and use them to infer evolutionary relationships. The chloroplast genomes of L. acutangula and L. aegyptiaca are 157,202 and 157,275 bp, respectively. Both genomes possessed the typical quadripartite structure and contained 131 genes, including 87 coding genes, 36 tRNA genes and 8 rRNA genes. We identified simple sequence repeats (SSR) and single nucleotide polymorphisms (SNP) from both chloroplast genomes. Polycistronic mRNA was examined in L. acutangula and L. aegyptiaca using RNA sequences from Isoform sequencing to identify co-transcribed genes. IR size and locations were compared to other species and found to be relatively unchanged. Phylogenetic analysis confirmed the close relationship between L. acutangula and L. aegyptiaca in the Cucurbitaceae lineage and showed separation of the Luffa monophyletic clade from other species in the subtribe Sicyocae. The results obtained from this study can be useful for studying the evolution of Cucurbitaceae plants. (C) 2020 The Author(s). Published by Elsevier Inc.
Industrial Classification
Knowledge Taxonomy Level 1
Knowledge Taxonomy Level 2
Knowledge Taxonomy Level 3
Funding Sponsor
National Science and Technology Development Agency (NSTDA) [2000025]
License
CC BY
Rights
Authors
Publication Source
WOS